Lactobacillaceae

Lactobacillaceae
	Lactobacillus near a squamous epithelial cell
Scientific classification
Domain:	Bacteria
Phylum:	Bacillota
Class:	Bacilli
Order:	Lactobacillales
Family:	Lactobacillaceae; Winslow et al. 1917 (Approved Lists 1980)
Type genus
	Lactobacillus; Beijerinck 1901 (Approved Lists 1980)
Genera
	Acetilactobacillus Zheng et al. 2020; Agrilactobacillus Zheng et al. 2020; Amylolactobacillus Zheng et al. 2020; Apilactobacillus Zheng et al. 2020; Bombilactobacillus Zheng et al. 2020; Companilactobacillus Zheng et al. 2020; Convivina Praet et al. 2015; Dellaglioa Zheng et al. 2020; Fructilactobacillus Zheng et al. 2020; Fructobacillus Endo and Okada 2008; Furfurilactobacillus Zheng et al. 2020; Holzapfelia Zheng et al. 2020; Lacticaseibacillus Zheng et al. 2020; Lactiplantibacillus Zheng et al. 2020; Lactobacillus Beijerinck 1901 (Approved Lists 1980); Lapidilactobacillus Zheng et al. 2020; Latilactobacillus Zheng et al. 2020; Lentilactobacillus Zheng et al. 2020; Leuconostoc van Tieghem 1878 (Approved Lists 1980); Levilactobacillus Zheng et al. 2020; Ligilactobacillus Zheng et al. 2020; Limosilactobacillus Zheng et al. 2020; Liquorilactobacillus Zheng et al. 2020; Loigolactobacillus Zheng et al. 2020; Oenococcus Dicks et al. 1995; Paralactobacillus Leisner et al. 2000; Paucilactobacillus Zheng et al. 2020; Pediococcus Claussen 1903 (Approved Lists 1980); Schleiferilactobacillus Zheng et al. 2020; Secundilactobacillus Zheng et al. 2020; Weissella Collins et al. 1994;
Synonyms
	Leuconostocaceae Schleifer 2010;

The Lactobacillaceae are a family of lactic acid bacteria.^[3] It is the only family in the lactic acid bacteria which includes homofermentative and heterofermentative organisms;^[4] in the Lactobacillaceae, the pathway used for hexose fermentation is a genus-specific trait. Lactobacillaceae include the homofermentative lactobacilli Lactobacillus, Holzapfelia, Amylolactobacillus, Bombilactobacillus, Companilactobacillus, Lapidilactobacillus, Agrilactobacillus, Schleiferilactobacillus, Loigolactobacillus, Lacticaseibacillus, Latilactobacillus, Dellaglioa, Liquorilactobacillus, Ligilactobacillus, and Lactiplantibacillus; the heterofermentative lactobacilli Furfurilactobacillus, Paucilactobacillus, Limosilactobacillus, Fructilactobacillus, Acetilactobacillus, Apilactobacillus, Levilactobacillus, Secundilactobacillus, and Lentilactobacillus, which were previously classified in the genus Lactobacillus; and the heterofermentative genera Convivina, Fructobacillus, Leuconostoc, Oenococcus, and Weissella which were previously classified in the Leuconostocaceae.^[2]

The Lactobacillaceae are also the only family of the lactic acid bacteria which does not include pathogenic or opportunistic pathogenic organisms although some species, particularly Lacticaseibacillus rhamnosus and Weissella spp. can cause rare infections in critically ill patients.^[5]^[6]

With the exception of Lactococcus lactis, Streptococcus thermophilus and Tetragenococcus halophilus, most food fermenting lactic acid bacteria are now classified in the Lactobacillaceae.^[2]^[7]^[8]

The grandfathered term lactobacilli refers to all bacteria classified in Lactobacillaceae prior to 2020, i.e. Lactobacillus sensu lato (pre-split), Pediococcus, and Sharpea.^[2] Some authors use lactobacilli to refer to Lactobacillus sensu lato only.

Leuconostocaceae

At one point five genera (Convivina, Fructobacillus, Leuconostoc, Oenococcus and Weissella) were considered a separate family called Leuconostocaceae.^[9] These three genera are non-spore-forming, round or elongated in shape, and anaerobic or aerotolerant. They usually inhabit nutrient-rich environments such as milk, meat, vegetable products, and fermented drinks.^[10]^[11] Lactic acid is the main end product of their characteristic heterofermentative carbohydrate metabolism. In 2020 Leuconostocaceae was synonymized with Lactobacillaceae.^[2]

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature^[1] and the phylogeny is based on whole-genome sequences.^[2]

Lactobacillaceae

Loigolactobacillus

	Paralactobacillus

	Latilactobacillus

Lacticaseibacillus

	Schleiferilactobacillus

	Agrilactobacillus

Lapidilactobacillus

	Bombilactobacillus

	Companilactobacillus

Holzapfelia

	Lactobacillus

	Amylolactobacillus

Dellaglioa

	Ligilactobacillus

	Liquorilactobacillus

Pediococcus

Furfurilactobacillus

	Limosilactobacillus

	Paucilactobacillus

Lactiplantibacillus

	Levilactobacillus

	Secundilactobacillus

Lentilactobacillus

Fructilactobacillus

	Apilactobacillus

	Acetilactobacillus

Weissella

formerly Leuconostocaceae

Oenococcus

Leuconostoc

	Fructobacillus

	Convivina

outgroup

Enterococcaceae

References

^ ^a ^b Euzéby JP, Parte AC. "Lactobacillaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 30, 2021.
^ ^a ^b ^c ^d ^e ^f ^g Zheng J, Wittouck S, Salvetti E, Franz CMAP, Harris HMB, Mattarelli P, O'Toole PW, Pot B, Vandamme P, Walter J, Watanabe K, Wuyts S, Felis GE, Gänzle MG, Lebeer S. (2020). "A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae". Int J Syst Evol Microbiol. 70 (4): 2782–2858. doi:10.1099/ijsem.0.004107. hdl:10067/1738330151162165141. PMID 32293557.
^ "Lactobacillaceae - Definition and More from Merriam-Webster's Free Medical Dictionary". Merriam-Webster Online. Retrieved 26 July 2010.
^ Gänzle, Michael G (2015). "Lactic metabolism revisited: metabolism of lactic acid bacteria in food fermentations and food spoilage". Current Opinion in Food Science. Food Microbiology • Functional Foods and Nutrition. 2: 106–117. doi:10.1016/j.cofs.2015.03.001. ISSN 2214-7993.
^ Ricci, Antonia; Allende, Ana; Bolton, Declan; Chemaly, Marianne; Davies, Robert; Girones, Rosina; Herman, Lieve; Koutsoumanis, Konstantinos; Lindqvist, Roland; Nørrung, Birgit; Robertson, Lucy (2017). "Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA". EFSA Journal. 15 (3): e04664. doi:10.2903/j.efsa.2017.4664. ISSN 1831-4732. PMC 7010101. PMID 32625421.
^ Abriouel, Hikmate; Lerma, Leyre Lavilla; Casado Muñoz, María del Carmen; Montoro, Beatriz Pérez; Kabisch, Jan; Pichner, Rohtraud; Cho, Gyu-Sung; Neve, Horst; Fusco, Vincenzina; Franz, Charles M. A. P.; Gálvez, Antonio (2015). "The controversial nature of the Weissella genus: Technological and functional aspects versus whole genome analysis-based pathogenic potential for their application in food and health". Frontiers in Microbiology. 6: 1197. doi:10.3389/fmicb.2015.01197. ISSN 1664-302X. PMC 4621295. PMID 26579103.
^ Gänzle, Michael (2019), "Fermented Foods", Food Microbiology, John Wiley & Sons, Ltd, pp. 855–900, doi:10.1128/9781555819972.ch33, ISBN 978-1-68367-047-6, S2CID 242940113, retrieved 2020-11-28
^ Hutkins, Robert W., ed. (2018). Microbiology and Technology of Fermented Foods (2nd ed.). doi:10.1002/9780470277515. ISBN 9780470277515.
^ Chelo, Ivo M.; Zé-Zé, Líbia; Tenreiro, Rogério (2007). "Congruence of evolutionary relationships inside the Leuconostoc-Oenococcus-Weissella clade assessed by phylogenetic analysis of the 16S rRNA gene, dnaA, gyrB, rpoC and dnaK". International Journal of Systematic and Evolutionary Microbiology. 57 (2): 276–86. doi:10.1099/ijs.0.64468-0. PMID 17267964.
^ Björkroth, Johanna; Holzapfel, Wilhelm (2006). "Genera Leuconostoc, Oenococcus and Weissella". The Prokaryotes. pp. 267–319. doi:10.1007/0-387-30744-3_9. ISBN 978-0-387-25494-4.
^ Mohammad, Salma Malihah; Mahmud-Ab-Rashid, Nor-Khaizura; Zawawi, Norhasnida (2020-08-25). "Probiotic properties of bacteria isolated from bee bread of stingless bee Heterotrigona itama" (PDF). Journal of Apicultural Research. 60: 172–187. doi:10.1080/00218839.2020.1801152. ISSN 0021-8839. S2CID 225208290.

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[LPSN-1] Euzéby JP, Parte AC. "Lactobacillaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 30, 2021.

[split-2] ^ ^a ^b ^c ^d ^e ^f ^g Zheng J, Wittouck S, Salvetti E, Franz CMAP, Harris HMB, Mattarelli P, O'Toole PW, Pot B, Vandamme P, Walter J, Watanabe K, Wuyts S, Felis GE, Gänzle MG, Lebeer S. (2020). "A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae". Int J Syst Evol Microbiol. 70 (4): 2782–2858. doi:10.1099/ijsem.0.004107. hdl:10067/1738330151162165141. PMID 32293557.

[3] "Lactobacillaceae - Definition and More from Merriam-Webster's Free Medical Dictionary". Merriam-Webster Online. Retrieved 26 July 2010.

[4] Gänzle, Michael G (2015). "Lactic metabolism revisited: metabolism of lactic acid bacteria in food fermentations and food spoilage". Current Opinion in Food Science. Food Microbiology • Functional Foods and Nutrition. 2: 106–117. doi:10.1016/j.cofs.2015.03.001. ISSN 2214-7993.

[5] Ricci, Antonia; Allende, Ana; Bolton, Declan; Chemaly, Marianne; Davies, Robert; Girones, Rosina; Herman, Lieve; Koutsoumanis, Konstantinos; Lindqvist, Roland; Nørrung, Birgit; Robertson, Lucy (2017). "Scientific Opinion on the update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA". EFSA Journal. 15 (3): e04664. doi:10.2903/j.efsa.2017.4664. ISSN 1831-4732. PMC 7010101. PMID 32625421.

[6] Abriouel, Hikmate; Lerma, Leyre Lavilla; Casado Muñoz, María del Carmen; Montoro, Beatriz Pérez; Kabisch, Jan; Pichner, Rohtraud; Cho, Gyu-Sung; Neve, Horst; Fusco, Vincenzina; Franz, Charles M. A. P.; Gálvez, Antonio (2015). "The controversial nature of the Weissella genus: Technological and functional aspects versus whole genome analysis-based pathogenic potential for their application in food and health". Frontiers in Microbiology. 6: 1197. doi:10.3389/fmicb.2015.01197. ISSN 1664-302X. PMC 4621295. PMID 26579103.

[7] Gänzle, Michael (2019), "Fermented Foods", Food Microbiology, John Wiley & Sons, Ltd, pp. 855–900, doi:10.1128/9781555819972.ch33, ISBN 978-1-68367-047-6, S2CID 242940113, retrieved 2020-11-28

[8] Hutkins, Robert W., ed. (2018). Microbiology and Technology of Fermented Foods (2nd ed.). doi:10.1002/9780470277515. ISBN 9780470277515.

[9] Chelo, Ivo M.; Zé-Zé, Líbia; Tenreiro, Rogério (2007). "Congruence of evolutionary relationships inside the Leuconostoc-Oenococcus-Weissella clade assessed by phylogenetic analysis of the 16S rRNA gene, dnaA, gyrB, rpoC and dnaK". International Journal of Systematic and Evolutionary Microbiology. 57 (2): 276–86. doi:10.1099/ijs.0.64468-0. PMID 17267964.

[10] Björkroth, Johanna; Holzapfel, Wilhelm (2006). "Genera Leuconostoc, Oenococcus and Weissella". The Prokaryotes. pp. 267–319. doi:10.1007/0-387-30744-3_9. ISBN 978-0-387-25494-4.

[11] Mohammad, Salma Malihah; Mahmud-Ab-Rashid, Nor-Khaizura; Zawawi, Norhasnida (2020-08-25). "Probiotic properties of bacteria isolated from bee bread of stingless bee Heterotrigona itama" (PDF). Journal of Apicultural Research. 60: 172–187. doi:10.1080/00218839.2020.1801152. ISSN 0021-8839. S2CID 225208290.

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